1.
Cell Probe
2.
Cell CAD
3.
Cellular Legos
4.
The Living Bioreactor
THEME 2
CELL CAD
Changing cell or tissue structures requires changing the molecular state of cells. However, we do not know how to translate cell and tissue structures into the molecular programs that encode them. We propose to take two complementary approaches towards solving this problem: we will build mathematical models from first principles and identify the key parameters in these models that are amenable to programming; and we will train machine learning algorithms to recognize non-linear correlations between molecular state and physical structure that can be exploited for design.
TEAM
Sara Capponi (Theme Lead)
Data-driven and model-driven approaches to CellCAD
Shawn Douglas
Building CAD software tools for tissue self-assembly
Wallace Marshall
Morphological state space modeling; Coarse grained models of organelle size
Diana Chu
Modeling mitotic spindles
Mark Chan
Modeling vacuole dynamics
Blake Riggs
Coupled inheritance of organelles
John Dueber
Modeling peroxisome dynamics